CRISPR

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Diagram of a CRISPR locus. There are three main parts.
1. cas genes,
2. a leader sequence, and
3. A repeat-spacer array.
The arrangement of the three components is not always as shown
CRISPR Cascade protein (cyan) bound to CRISPR RNA (green) and phage DNA (red)
CRISPR/Cas9

CRISPR is a term in DNA research. It stands for clustered regularly-interspaced short palindromic repeats. These are part of the genetic code in prokaryotes: most bacteria and archaea have it.[1]

CRISPR has a lot of short repeated sequences. These sequences are part of an adaptive immune system for prokaryotes. It allows them to remember and counter other organisms that prey on them, such as bacteriophages. They work as a kind of acquired immunity for bacteria.[2]

They can modify the genes of almost any organism. They are used by researchers as a tool to cut and insert genes in genetic modification (GM).[3] Work is under way to find how they can be used to attack virus diseases in humans (gene therapy).[4]

How it works[change | change source]

Each repetition is followed by short segments of "spacer DNA". These come from previous exposures to a bacterial virus or plasmid.[4] CRISPR spacers recognize and cut up the foreign genetic elements in a manner like RNA interference in eukaryotic organisms.

In effect, the spacers are fragments of DNA from viruses that have previously tried to attack the cell line. The foreign source of the spacers was a sign to researchers that the CRISPR/cas system could have a role in adaptive immunity in bacteria.[5]

The actual cutting is done by a nuclease called Cas9. Cas9 has two active cutting sites, one for each strand of the DNA's double helix. Cas9 does this by unwinding foreign DNA and checking whether it is complementary to the 20 basepair spacer region of the guide RNA (the spacer region RNA). If it is, the foreign DNA gets chopped up.[6]

Applications[change | change source]

A summary of this topic is "gene editing is a human exploitation of a defensive system which originated in bacteria".

The technology has been used to switch off genes in human cell lines and cells, to study Candida albicans, to modify yeasts used to make biofuel and to genetically modify crop strains.[7]

The CRISPR-Cas9 system cuts DNA, but can do more. It can turn gene expression on and off, and can be used to fluorescently tag particular sequences.[8]

Nobel award[change | change source]

The development of the CRISPR-Cas9 genome editing technique was recognized by the Nobel Prize in Chemistry for 2020 which was awarded jointly to Emmanuelle Charpentier and Jennifer Doudna.[9][10]

References[change | change source]

  1. Grissa I; Vergnaud G. & Pourcel C. 2007. The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats. BMC Bioinformatics 8: 172. [1]
  2. Lecture by Jennifer Doudna [2]
  3. Carey, Nessa 2019. Hacking the code of life: how gene editing will rewrite our futures. Brilliance. ISBN 172138667X.
  4. 4.0 4.1 Marraffini L.A. & Sontheimer E.J. 2010. CRISPR interference: RNA-directed adaptive immunity in bacteria and archaea. Nature Reviews Genetics 11 (3): 181–190. [3]
  5. Morange, M (2015). "What history tells us XXXVII. CRISPR-Cas: The discovery of an immune system in prokaryotes". J. Biosci. 2 (2): 221–223. doi:10.1007/s12038-015-9532-6. PMID 25963251.
  6. Re-writing the Code of Life: CRISPR systems and applications of gene editing. Jennifer Doudna at the Royal Society on YouTube. [4]
  7. Ledford H (2015). "CRISPR, the disruptor". Nature. 522 (7554): 20–4. Bibcode:2015Natur.522...20L. doi:10.1038/522020a. PMID 26040877.
  8. CRISPR: Gene editing and beyond/ [5]
  9. "Press release: The Nobel Prize in Chemistry 2020". Nobel Foundation. Retrieved 7 October 2020.
  10. Wu KJ, Peltier E (7 October 2020). "Nobel Prize in Chemistry Awarded to 2 Scientists for Work on Genome Editing – Emmanuelle Charpentier and Jennifer A. Doudna developed the Crispr tool, which can alter the DNA of animals, plants and microorganisms with high precision". The New York Times. Retrieved 7 October 2020.